RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g47560.1 View Network Show in Genome Browser |
| Other Names | Os05g0549100 |
| Description | serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27245246-27249448 Nucleotide Length: 1680 |
| Protein-coding | LOC_Os05g47560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g19150 LOC_Os04g37904 LOC_Os01g01160 LOC_Os03g53300 LOC_Os04g56450 LOC_Os02g05630 LOC_Os02g55560 LOC_Os03g31490 LOC_Os02g45670 LOC_Os01g52010 LOC_Os02g32730 More.. |
| Downstream Genes | LOC_Os06g45480 LOC_Os06g48300 LOC_Os07g32380 LOC_Os06g48510 LOC_Os06g33549 LOC_Os12g32250 LOC_Os06g33530 LOC_Os12g32970 LOC_Os10g39540 LOC_Os11g39020 LOC_Os06g44210 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 osa-miR444a-3p.2 osa-miR444d.2 osa-miR444e |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g47560.1 |
| Rice Genome Annotation | LOC_Os05g47560.1 |
| Ricechip | LOC_Os05g47560.1 |
| KEGG | osa:4339518 dosa:Os05t0549100-02 |
| Entrez-Gene | 4339518 |