RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g47640.1 View Network Show in Genome Browser |
| Other Names | Os05g0549700 |
| Description | threonine synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27290558-27292585 Nucleotide Length: 1566 |
| Protein-coding | LOC_Os05g47640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g58510 LOC_Os04g46930 LOC_Os03g50510 LOC_Os03g11660 LOC_Os01g59920 LOC_Os01g74650 LOC_Os05g22960 LOC_Os01g13700 LOC_Os04g01690 |
| Downstream Genes | LOC_Os11g03470 LOC_Os12g03190 LOC_Os06g42560 LOC_Os12g42980 LOC_Os08g04180 LOC_Os07g33240 LOC_Os08g25390 LOC_Os09g12290 LOC_Os08g33920 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn01100 rn01120 rn00750 |
| Metacyc Pathways | HOMOSER-THRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g47640.1 |
| Rice Genome Annotation | LOC_Os05g47640.1 |
| Ricechip | LOC_Os05g47640.1 |
| KEGG | osa:4339521 dosa:Os05t0549700-01 |
| Entrez-Gene | 4339521 |