RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g47650.1 View Network Show in Genome Browser |
| Other Names | Os05g0549800 |
| Description | B3 DNA binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27302985-27304597 Nucleotide Length: 1185 |
| Protein-coding | LOC_Os05g47650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g50130 LOC_Os02g07200 LOC_Os05g30900 LOC_Os02g50570 LOC_Os04g44910 LOC_Os04g44900 LOC_Os01g63690 LOC_Os02g09980 LOC_Os05g01940 LOC_Os02g31100 LOC_Os04g46240 More.. |
| Downstream Genes | LOC_Os11g35310 LOC_Os09g25760 LOC_Os09g38620 LOC_Os10g30540 LOC_Os10g42690 LOC_Os09g37080 LOC_Os09g29310 LOC_Os10g28160 LOC_Os06g14420 LOC_Os12g03420 LOC_Os06g51390 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g47650.1 |
| Rice Genome Annotation | LOC_Os05g47650.1 |
| Ricechip | LOC_Os05g47650.1 |
| KEGG | osa:4339522 dosa:Os05t0549800-01 |
| Entrez-Gene | 4339522 |