RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g47780.1 View Network Show in Genome Browser |
| Other Names | Os05g0551000 |
| Description | E3 ubiquitin ligase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27377537-27382230 Nucleotide Length: 2436 |
| Protein-coding | LOC_Os05g47780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g32499 LOC_Os03g19420 LOC_Os01g65110 LOC_Os01g49470 LOC_Os04g33260 |
| Downstream Genes | LOC_Os12g18410 LOC_Os09g04384 LOC_Os07g15460 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275d |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g47780.1 |
| Rice Genome Annotation | LOC_Os05g47780.1 |
| Ricechip | LOC_Os05g47780.1 |
| KEGG | osa:4339530 dosa:Os05t0551000-01 |
| Entrez-Gene | 4339530 |