RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g47970.1 View Network Show in Genome Browser |
| Other Names | Os05g0552900 |
| Description | microtubule associated protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27504934-27509339 Nucleotide Length: 1989 |
| Protein-coding | LOC_Os05g47970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0007610 | behavior | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g37330 LOC_Os05g05220 LOC_Os04g44810 LOC_Os02g46320 LOC_Os01g49290 LOC_Os01g47600 LOC_Os03g12300 LOC_Os01g15260 LOC_Os03g10190 LOC_Os01g37837 LOC_Os05g47890 More.. |
| Downstream Genes | LOC_Os09g17850 LOC_Os12g05810 LOC_Os11g06750 LOC_Os08g40180 LOC_Os11g29390 LOC_Os12g07010 LOC_Os09g31970 LOC_Os12g26060 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2877 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g47970.1 |
| Rice Genome Annotation | LOC_Os05g47970.1 |
| Ricechip | LOC_Os05g47970.1 |
| KEGG | osa:4339545 dosa:Os05t0552900-01 |
| Entrez-Gene | 4339545 |