RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48010.1 View Network Show in Genome Browser |
| Other Names | Os05g0553400 |
| Description | MYB family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27524786-27526242 Nucleotide Length: 870 |
| Protein-coding | LOC_Os05g48010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32980 LOC_Os02g06592 |
| Downstream Genes | LOC_Os06g47840 LOC_Os08g42600 LOC_Os12g39210 LOC_Os12g31810 |
| Reference | |
|---|---|
| PubMed | 23251677 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48010.1 |
| Rice Genome Annotation | LOC_Os05g48010.1 |
| Ricechip | LOC_Os05g48010.1 |
| KEGG | osa:4339548 dosa:Os05t0553400-01 |
| Entrez-Gene | 4339548 |