RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48020.1 View Network Show in Genome Browser |
| Other Names | Os05g0553700 |
| Description | SNARE domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27530398-27533464 Nucleotide Length: 855 |
| Protein-coding | LOC_Os05g48020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38630 LOC_Os02g21250 LOC_Os01g73230 LOC_Os03g12460 LOC_Os03g57310 LOC_Os03g52650 LOC_Os03g16010 LOC_Os05g14180 LOC_Os02g35640 LOC_Os01g19450 LOC_Os03g25390 More.. |
| Downstream Genes | LOC_Os07g07000 LOC_Os06g39050 LOC_Os06g02570 LOC_Os06g51510 LOC_Os08g06470 LOC_Os07g12200 LOC_Os07g12170 LOC_Os11g07280 LOC_Os05g48240 LOC_Os06g37160 LOC_Os07g48780 More.. |
| Reference | |
|---|---|
| PubMed | 22583826 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48020.1 |
| Rice Genome Annotation | LOC_Os05g48020.1 |
| Ricechip | LOC_Os05g48020.1 |
| KEGG | osa:4339549 dosa:Os05t0553700-01 |
| Entrez-Gene | 4339549 |