RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48060.1 View Network Show in Genome Browser |
| Other Names | Os05g0554400 |
| Description | phosphatidylserine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27552589-27558235 Nucleotide Length: 1269 |
| Protein-coding | LOC_Os05g48060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61790 LOC_Os05g35730 LOC_Os03g02710 LOC_Os04g50216 LOC_Os05g01700 LOC_Os01g73530 LOC_Os03g20750 LOC_Os03g23970 LOC_Os03g54790 LOC_Os02g01510 LOC_Os03g50380 More.. |
| Downstream Genes | LOC_Os07g12770 LOC_Os11g11050 LOC_Os08g25090 LOC_Os07g39870 LOC_Os07g15880 LOC_Os07g41190 LOC_Os10g37690 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00564 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48060.1 |
| Rice Genome Annotation | LOC_Os05g48060.1 |
| Ricechip | LOC_Os05g48060.1 |
| KEGG | osa:4339554 dosa:Os05t0554400-01 |
| Entrez-Gene | 4339554 |