RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48240.1 View Network Show in Genome Browser |
| Other Names | Os05g0556100 |
| Description | dynamin family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27647978-27653685 Nucleotide Length: 1830 |
| Protein-coding | LOC_Os05g48240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0007267 | cell-cell signaling | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g46510 LOC_Os02g50550 LOC_Os03g50520 LOC_Os05g32390 LOC_Os02g21250 LOC_Os01g68710 LOC_Os02g13270 LOC_Os03g58960 LOC_Os05g06700 LOC_Os03g13380 LOC_Os05g38610 More.. |
| Downstream Genes | LOC_Os12g10560 LOC_Os08g15040 LOC_Os07g10110 LOC_Os11g07280 LOC_Os06g47330 LOC_Os06g41440 LOC_Os07g10150 LOC_Os06g38550 LOC_Os11g37480 LOC_Os08g16559 LOC_Os09g02170 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48240.1 |
| Rice Genome Annotation | LOC_Os05g48240.1 |
| Ricechip | LOC_Os05g48240.1 |
| KEGG | osa:4339566 dosa:Os05t0556100-01 |
| Entrez-Gene | 4339566 |