RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48340.1 View Network Show in Genome Browser |
| Other Names | Os05g0557200 |
| Description | proteasome-related, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27712350-27717899 Nucleotide Length: 1581 |
| Protein-coding | LOC_Os05g48340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g54340 LOC_Os03g02680 LOC_Os03g01850 LOC_Os04g40830 LOC_Os02g05340 LOC_Os03g55110 LOC_Os03g18690 LOC_Os04g36700 LOC_Os03g33580 LOC_Os02g42320 LOC_Os03g48930 More.. |
| Downstream Genes | LOC_Os06g09290 LOC_Os06g48640 LOC_Os09g15750 LOC_Os07g49150 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os11g48030 LOC_Os08g43640 LOC_Os06g06030 LOC_Os06g41750 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00680 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY ANAEROFRUCAT-PWY ANARESP1-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48340.1 |
| Rice Genome Annotation | LOC_Os05g48340.1 |
| Ricechip | LOC_Os05g48340.1 |
| KEGG | osa:4339575 dosa:Os05t0557200-01 |
| Entrez-Gene | 4339575 |