RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48510.2 View Network Show in Genome Browser |
| Other Names | Os05g0558900 |
| Description | phenylalanyl-tRNA synthetase beta chain, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27800947-27808032 Nucleotide Length: 1497 |
| Protein-coding | LOC_Os05g48510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g45220 LOC_Os01g53280 LOC_Os02g55120 LOC_Os02g33500 LOC_Os02g01110 LOC_Os03g43860 LOC_Os03g52970 LOC_Os02g05330 LOC_Os01g73310 LOC_Os05g01600 LOC_Os05g05840 More.. |
| Downstream Genes | LOC_Os10g26130 LOC_Os12g34860 LOC_Os08g19850 LOC_Os06g43900 LOC_Os10g42860 LOC_Os10g34470 LOC_Os06g43760 LOC_Os06g03940 LOC_Os12g35570 LOC_Os06g19680 LOC_Os06g48750 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48510.2 |
| Rice Genome Annotation | LOC_Os05g48510.2 |
| Ricechip | LOC_Os05g48510.2 |
| KEGG | osa:4339585 dosa:Os05t0558900-01 |
| Entrez-Gene | 4339585 |