RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48620.1 View Network Show in Genome Browser |
| Other Names | Os05g0559900 |
| Description | tRNA-binding arm, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27868472-27877538 Nucleotide Length: 3099 |
| Protein-coding | LOC_Os05g48620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10190 LOC_Os03g09140 LOC_Os01g37837 LOC_Os04g44810 LOC_Os02g51430 LOC_Os01g46980 LOC_Os01g33050 LOC_Os05g14170 LOC_Os01g55050 LOC_Os05g48030 LOC_Os01g66520 More.. |
| Downstream Genes | LOC_Os07g32450 LOC_Os07g31370 LOC_Os10g41590 LOC_Os12g37430 LOC_Os12g35620 LOC_Os12g09089 LOC_Os10g20240 LOC_Os08g14640 LOC_Os06g07090 LOC_Os06g09330 LOC_Os10g15390 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48620.1 |
| Rice Genome Annotation | LOC_Os05g48620.1 |
| Ricechip | LOC_Os05g48620.1 |
| KEGG | osa:4339592 dosa:Os05t0559900-01 |
| Entrez-Gene | 4339592 |