RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48750.1 View Network Show in Genome Browser |
| Other Names | Os05g0561500 |
| Description | 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27936127-27939345 Nucleotide Length: 894 |
| Protein-coding | LOC_Os05g48750 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g50160 LOC_Os01g34970 LOC_Os05g04610 LOC_Os01g50100 LOC_Os01g74470 LOC_Os02g21750 LOC_Os01g18670 LOC_Os04g40570 LOC_Os05g06190 LOC_Os01g35030 LOC_Os04g33390 More.. |
| Downstream Genes | LOC_Os07g01200 LOC_Os10g30300 LOC_Os07g49390 LOC_Os09g39260 LOC_Os09g39230 LOC_Os10g37980 LOC_Os06g45930 LOC_Os07g32774 LOC_Os08g44320 LOC_Os11g20790 LOC_Os08g19140 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00540 rn01100 |
| Metacyc Pathways | PWY-5111 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48750.1 |
| Rice Genome Annotation | LOC_Os05g48750.1 |
| Ricechip | LOC_Os05g48750.1 |
| KEGG | osa:4339603 dosa:Os05t0561500-01 |
| Entrez-Gene | 4339603 |