RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48840.1 View Network Show in Genome Browser |
| Other Names | Os05g0562800 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27989730-27990665 Nucleotide Length: 717 |
| Protein-coding | LOC_Os05g48840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51980 LOC_Os04g37500 LOC_Os02g02320 LOC_Os05g28830 LOC_Os03g20120 LOC_Os01g61120 |
| Downstream Genes | LOC_Os11g04010 LOC_Os10g07229 LOC_Os12g03470 LOC_Os06g09270 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48840.1 |
| Rice Genome Annotation | LOC_Os05g48840.1 |
| Ricechip | LOC_Os05g48840.1 |
| KEGG | osa:4339611 dosa:Os05t0562800-02 |
| Entrez-Gene | 4339611 |