RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48900.1 View Network Show in Genome Browser |
| Other Names | Os05g0563600 |
| Description | fasciclin domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28051693-28052945 Nucleotide Length: 819 |
| Protein-coding | LOC_Os05g48900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g32110 LOC_Os03g52630 LOC_Os02g15230 LOC_Os05g03174 LOC_Os05g08370 LOC_Os01g15320 LOC_Os02g48710 LOC_Os04g55670 LOC_Os02g47010 LOC_Os03g55070 |
| Downstream Genes | LOC_Os07g27810 LOC_Os06g03640 LOC_Os07g14850 LOC_Os12g01560 LOC_Os11g01570 LOC_Os08g35710 LOC_Os09g32080 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48900.1 |
| Rice Genome Annotation | LOC_Os05g48900.1 |
| Ricechip | LOC_Os05g48900.1 |
| KEGG | osa:4339617 dosa:Os05t0563600-01 |
| Entrez-Gene | 4339617 |