RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48930.1 View Network Show in Genome Browser |
| Other Names | Os05g0563900 |
| Description | OsGrx_S2 - glutaredoxin subgroup III, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28067838-28068782 Nucleotide Length: 399 |
| Protein-coding | LOC_Os05g48930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18910 LOC_Os03g63720 LOC_Os05g47770 LOC_Os04g40030 LOC_Os01g62430 LOC_Os02g12910 LOC_Os04g19810 LOC_Os02g02360 LOC_Os03g01090 LOC_Os02g32370 LOC_Os04g12580 More.. |
| Downstream Genes | LOC_Os12g43640 LOC_Os06g08770 LOC_Os10g37500 LOC_Os09g03620 LOC_Os07g43020 LOC_Os09g12240 LOC_Os11g25860 LOC_Os07g39520 LOC_Os11g11100 LOC_Os09g24700 LOC_Os12g01390 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Reference | |
|---|---|
| PubMed | 21044985 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48930.1 |
| Rice Genome Annotation | LOC_Os05g48930.1 |
| Ricechip | LOC_Os05g48930.1 |
| KEGG | dosa:Os05t0563900-01 |
| Entrez-Gene | 9269297 |