RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48960.2 View Network Show in Genome Browser |
| Other Names | Os05g0564200 |
| Description | splicing factor U2AF, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28080212-28082963 Nucleotide Length: 915 |
| Protein-coding | LOC_Os05g48960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05310 LOC_Os03g13760 LOC_Os02g01250 LOC_Os02g57010 LOC_Os01g15350 LOC_Os01g72890 LOC_Os03g50850 LOC_Os01g34190 LOC_Os02g01740 LOC_Os02g13990 LOC_Os02g52140 More.. |
| Downstream Genes | LOC_Os11g41820 LOC_Os08g37960 LOC_Os11g45590 LOC_Os07g47630 LOC_Os10g02630 LOC_Os07g37650 LOC_Os10g06130 LOC_Os07g32430 LOC_Os10g31900 LOC_Os12g01190 LOC_Os07g07220 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48960.2 |
| Rice Genome Annotation | LOC_Os05g48960.2 |
| Ricechip | LOC_Os05g48960.2 |
| KEGG | osa:4339621 dosa:Os05t0564200-01 |
| Entrez-Gene | 4339621 |