RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49130.1 View Network Show in Genome Browser |
| Other Names | Os05g0566300 |
| Description | 16S rRNA processing protein RimM containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28183127-28188697 Nucleotide Length: 915 |
| Protein-coding | LOC_Os05g49130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g11030 LOC_Os02g32400 LOC_Os02g43600 LOC_Os01g56600 LOC_Os05g43390 LOC_Os01g72800 LOC_Os03g19510 LOC_Os02g04060 LOC_Os02g04050 LOC_Os01g67740 LOC_Os02g04040 More.. |
| Downstream Genes | LOC_Os08g40610 LOC_Os09g32274 LOC_Os11g05552 LOC_Os11g05556 LOC_Os08g37444 LOC_Os06g25250 LOC_Os09g14610 LOC_Os12g44390 LOC_Os10g34430 LOC_Os05g51790 LOC_Os09g33460 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49130.1 |
| Rice Genome Annotation | LOC_Os05g49130.1 |
| Ricechip | LOC_Os05g49130.1 |
| KEGG | osa:4339632 dosa:Os05t0566300-01 |
| Entrez-Gene | 4339632 |