RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49250.2 View Network Show in Genome Browser |
| Other Names | Os05g0567500 |
| Description | hhH-GPD superfamily base excision DNA repair protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28255398-28256757 Nucleotide Length: 873 |
| Protein-coding | LOC_Os05g49250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g39040 LOC_Os02g21460 LOC_Os02g34750 LOC_Os04g41960 LOC_Os04g56646 LOC_Os03g04240 LOC_Os02g26814 LOC_Os02g34790 LOC_Os03g04250 LOC_Os05g15890 LOC_Os03g39000 More.. |
| Downstream Genes | LOC_Os06g12580 LOC_Os11g16580 LOC_Os10g42250 LOC_Os10g37630 LOC_Os11g07870 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os09g36530 LOC_Os09g15480 LOC_Os07g49150 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49250.2 |
| Rice Genome Annotation | LOC_Os05g49250.2 |
| Ricechip | LOC_Os05g49250.2 |
| KEGG | osa:4339642 dosa:Os05t0567500-01 |
| Entrez-Gene | 4339642 |