RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49380.1 View Network Show in Genome Browser |
| Other Names | Os05g0568900 |
| Description | OsDegp9 - Putative Deg protease homologue, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28314582-28318696 Nucleotide Length: 1314 |
| Protein-coding | LOC_Os05g49380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10860 LOC_Os01g29740 LOC_Os02g19150 LOC_Os03g38230 LOC_Os02g57060 LOC_Os01g47450 LOC_Os01g46590 LOC_Os02g53860 LOC_Os03g31490 LOC_Os04g52500 LOC_Os03g55820 More.. |
| Downstream Genes | LOC_Os09g39560 LOC_Os09g25310 LOC_Os12g19530 LOC_Os08g31470 LOC_Os07g12530 LOC_Os08g06530 LOC_Os06g21380 LOC_Os08g13320 LOC_Os06g45480 LOC_Os07g07480 LOC_Os08g26870 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49380.1 |
| Rice Genome Annotation | LOC_Os05g49380.1 |
| Ricechip | LOC_Os05g49380.1 |
| KEGG | osa:4339651 dosa:Os05t0568900-01 |
| Entrez-Gene | 4339651 |