RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49420.1 View Network Show in Genome Browser |
| Other Names | Os05g0569300 |
| Description | transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28334745-28339606 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os05g49420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g04530 LOC_Os03g13810 LOC_Os04g54474 LOC_Os01g59350 LOC_Os05g36160 LOC_Os01g64730 LOC_Os01g13740 LOC_Os02g10860 LOC_Os01g64020 LOC_Os03g14260 LOC_Os05g34050 More.. |
| Downstream Genes | LOC_Os07g27320 LOC_Os06g24070 LOC_Os10g40100 LOC_Os06g19730 LOC_Os09g34900 LOC_Os09g01630 LOC_Os06g42560 LOC_Os07g41090 LOC_Os10g03550 LOC_Os09g34130 |
| Reference | |
|---|---|
| PubMed | 18065552 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49420.1 |
| Rice Genome Annotation | LOC_Os05g49420.1 |
| Ricechip | LOC_Os05g49420.1 |
| KEGG | osa:4339653 dosa:Os05t0569300-01 |
| Entrez-Gene | 4339653 |