RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49460.1 View Network Show in Genome Browser |
| Other Names | Os05g0569700 |
| Description | CTP synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28351859-28356807 Nucleotide Length: 1569 |
| Protein-coding | LOC_Os05g49460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15950 LOC_Os03g14450 LOC_Os01g66360 LOC_Os01g43020 LOC_Os01g46570 LOC_Os02g45660 LOC_Os04g40540 LOC_Os01g56620 LOC_Os03g15120 LOC_Os03g50880 LOC_Os01g01920 More.. |
| Downstream Genes | LOC_Os12g10784 LOC_Os09g20820 LOC_Os10g08550 LOC_Os06g04510 LOC_Os12g36950 LOC_Os05g49770 LOC_Os08g44280 LOC_Os05g49520 LOC_Os08g23730 LOC_Os06g48620 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR529b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 |
| Metacyc Pathways | PWY0-162 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49460.1 |
| Rice Genome Annotation | LOC_Os05g49460.1 |
| Ricechip | LOC_Os05g49460.1 |
| KEGG | osa:4339656 dosa:Os05t0569700-00 |
| Entrez-Gene | 4339656 |