RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49780.1 View Network Show in Genome Browser |
| Other Names | Os05g0573500 |
| Description | histone-like transcription factor and archaeal histone, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28572408-28575233 Nucleotide Length: 426 |
| Protein-coding | LOC_Os05g49780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70100 LOC_Os02g47150 LOC_Os02g07450 LOC_Os03g14669 LOC_Os01g43580 LOC_Os03g07880 LOC_Os03g29760 LOC_Os03g48970 LOC_Os02g53620 LOC_Os03g51200 LOC_Os05g07680 More.. |
| Downstream Genes | LOC_Os09g30310 LOC_Os08g38780 LOC_Os08g09690 LOC_Os11g34200 LOC_Os06g45640 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 LOC_Os12g41880 LOC_Os08g10560 LOC_Os07g41720 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Reference | |
|---|---|
| PubMed | 18193457 14617083 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49780.1 |
| Rice Genome Annotation | LOC_Os05g49780.1 |
| Ricechip | LOC_Os05g49780.1 |
| KEGG | osa:4339676 dosa:Os05t0573500-00 |
| Entrez-Gene | 4339676 |