RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49890.2 View Network Show in Genome Browser |
| Other Names | Os05g0574500 |
| Description | ras-related protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28622410-28624741 Nucleotide Length: 600 |
| Protein-coding | LOC_Os05g49890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18180 LOC_Os05g28290 LOC_Os04g38610 LOC_Os05g46560 LOC_Os05g28510 LOC_Os05g06350 LOC_Os03g46480 LOC_Os04g59494 LOC_Os05g28190 LOC_Os04g26841 LOC_Os03g18350 More.. |
| Downstream Genes | LOC_Os12g38110 LOC_Os08g42000 LOC_Os07g42180 LOC_Os08g33390 LOC_Os11g06390 LOC_Os10g33770 LOC_Os11g42420 LOC_Os09g28019 LOC_Os06g20090 LOC_Os07g41180 LOC_Os07g33850 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR395t osa-miR395c osa-miR395o |
| Reference | |
|---|---|
| PubMed | 20825577 20018899 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49890.2 |
| Rice Genome Annotation | LOC_Os05g49890.2 |
| Ricechip | LOC_Os05g49890.2 |
| KEGG | osa:4339683 dosa:Os05t0574500-01 |
| Entrez-Gene | 4339683 |