RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49900.1 View Network Show in Genome Browser |
| Other Names | Os05g0574600 |
| Description | 3-ketoacyl-CoA synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28625170-28627550 Nucleotide Length: 1563 |
| Protein-coding | LOC_Os05g49900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18590 LOC_Os04g36800 LOC_Os02g10320 LOC_Os03g22950 LOC_Os03g39860 LOC_Os05g31290 LOC_Os03g63930 LOC_Os04g30760 LOC_Os02g30060 LOC_Os02g35170 |
| Downstream Genes | LOC_Os07g42420 LOC_Os06g09630 LOC_Os07g12150 LOC_Os08g43580 LOC_Os12g13930 LOC_Os11g31900 LOC_Os12g34890 LOC_Os09g36860 LOC_Os07g30790 LOC_Os09g01620 LOC_Os08g40860 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | FASYN-INITIAL-PWY FASYN-ELONG-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49900.1 |
| Rice Genome Annotation | LOC_Os05g49900.1 |
| Ricechip | LOC_Os05g49900.1 |
| KEGG | osa:4339684 dosa:Os05t0574600-01 |
| Entrez-Gene | 4339684 |