RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g49970.1 View Network Show in Genome Browser |
| Other Names | Os05g0575300 |
| Description | translation initiation factor IF-2, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28654730-28658420 Nucleotide Length: 2052 |
| Protein-coding | LOC_Os05g49970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55940 LOC_Os04g48700 LOC_Os05g01750 LOC_Os03g25450 LOC_Os02g40460 LOC_Os04g56320 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os03g63720 LOC_Os03g62720 More.. |
| Downstream Genes | LOC_Os06g04610 LOC_Os07g44190 LOC_Os06g07896 LOC_Os07g07310 LOC_Os11g38600 LOC_Os12g21500 LOC_Os12g34550 LOC_Os12g10580 LOC_Os08g02360 LOC_Os09g27270 LOC_Os06g49140 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g49970.1 |
| Rice Genome Annotation | LOC_Os05g49970.1 |
| Ricechip | LOC_Os05g49970.1 |
| KEGG | osa:4339689 dosa:Os05t0575300-02 |
| Entrez-Gene | 4339689 |