RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g50270.1 View Network Show in Genome Browser |
| Other Names | Os05g0578900 |
| Description | GATA zinc finger domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28817605-28818871 Nucleotide Length: 840 |
| Protein-coding | LOC_Os05g50270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70380 LOC_Os04g20270 LOC_Os01g70370 LOC_Os01g53450 LOC_Os01g70360 LOC_Os04g41100 LOC_Os02g39010 LOC_Os03g17700 LOC_Os04g37680 LOC_Os02g35940 LOC_Os02g14790 More.. |
| Downstream Genes | LOC_Os06g39960 LOC_Os09g28630 LOC_Os07g38950 LOC_Os10g41150 LOC_Os09g28620 LOC_Os11g31640 LOC_Os09g28650 LOC_Os09g28640 LOC_Os09g28660 LOC_Os06g06090 LOC_Os09g28720 More.. |
| Reference | |
|---|---|
| PubMed | 19337211 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g50270.1 |
| Rice Genome Annotation | LOC_Os05g50270.1 |
| Ricechip | LOC_Os05g50270.1 |
| KEGG | osa:4339709 dosa:Os05t0578900-01 |
| Entrez-Gene | 4339709 |