RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g50550.1 View Network Show in Genome Browser |
| Other Names | Os05g0582300 |
| Description | polyprenyl synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 28984608-28988014 Nucleotide Length: 1212 |
| Protein-coding | LOC_Os05g50550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g46580 LOC_Os04g25540 LOC_Os01g50760 LOC_Os02g15900 LOC_Os01g69950 LOC_Os04g34130 LOC_Os01g50050 LOC_Os03g58540 LOC_Os04g56230 LOC_Os05g48410 LOC_Os04g56210 More.. |
| Downstream Genes | LOC_Os08g31228 LOC_Os08g31219 LOC_Os08g06230 LOC_Os11g47800 LOC_Os08g23320 LOC_Os06g05900 LOC_Os07g47300 LOC_Os07g42820 LOC_Os07g43470 LOC_Os06g05910 LOC_Os08g29910 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2929 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | PWY-5123 POLYISOPRENSYN-PWY PWY-5121 PWY-5122 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g50550.1 |
| Rice Genome Annotation | LOC_Os05g50550.1 |
| Ricechip | LOC_Os05g50550.1 |
| KEGG | dosa:Os05t0582300-01 |