RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g50580.1 View Network Show in Genome Browser |
| Other Names | Os05g0582600 |
| Description | OsSCP30 - Putative Serine Carboxypeptidase homologue, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29000107-29002044 Nucleotide Length: 1356 |
| Protein-coding | LOC_Os05g50580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21990 LOC_Os04g47240 LOC_Os02g35010 LOC_Os02g44642 |
| Downstream Genes | LOC_Os11g10100 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5540 osa-miR5160 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g50580.1 |
| Rice Genome Annotation | LOC_Os05g50580.1 |
| Ricechip | LOC_Os05g50580.1 |
| KEGG | osa:4339737 dosa:Os05t0582600-01 |
| Entrez-Gene | 4339737 |