RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g50890.1 View Network Show in Genome Browser |
| Other Names | Os05g0586200 |
| Description | OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29200198-29205717 Nucleotide Length: 1746 |
| Protein-coding | LOC_Os05g50890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g14570 LOC_Os02g19150 |
| Downstream Genes | LOC_Os08g37874 |
| Reference | |
|---|---|
| PubMed | 21619871 18266905 15856348 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g50890.1 |
| Rice Genome Annotation | LOC_Os05g50890.1 |
| Ricechip | LOC_Os05g50890.1 |
| KEGG | osa:4339756 dosa:Os05t0586200-01 |
| Entrez-Gene | 4339756 |