RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g50980.1 View Network Show in Genome Browser |
| Other Names | Os05g0587200 |
| Description | SET domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29251632-29255944 Nucleotide Length: 1413 |
| Protein-coding | LOC_Os05g50980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02390 LOC_Os03g52640 LOC_Os04g53700 LOC_Os03g19480 LOC_Os01g74500 LOC_Os02g39800 LOC_Os01g11952 LOC_Os03g07260 LOC_Os02g03030 LOC_Os01g73460 LOC_Os03g02640 More.. |
| Downstream Genes | LOC_Os11g41910 LOC_Os12g41900 LOC_Os12g13460 LOC_Os08g14660 LOC_Os08g10470 LOC_Os08g08210 LOC_Os07g28840 LOC_Os06g16390 LOC_Os06g03676 LOC_Os10g12354 LOC_Os06g01400 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5337a |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g50980.1 |
| Rice Genome Annotation | LOC_Os05g50980.1 |
| Ricechip | LOC_Os05g50980.1 |
| KEGG | osa:4339764 dosa:Os05t0587200-01 |
| Entrez-Gene | 4339764 |