RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g50990.1 View Network Show in Genome Browser |
| Other Names | Os05g0587300 |
| Description | TTL3, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29257803-29262204 Nucleotide Length: 1668 |
| Protein-coding | LOC_Os05g50990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g62040 LOC_Os03g53910 LOC_Os03g13370 LOC_Os01g43030 LOC_Os01g53250 LOC_Os02g05870 LOC_Os02g38900 LOC_Os05g50360 LOC_Os05g11550 LOC_Os01g51700 LOC_Os03g03650 More.. |
| Downstream Genes | LOC_Os07g08170 LOC_Os06g08770 LOC_Os07g03230 LOC_Os08g39080 LOC_Os06g41750 LOC_Os07g29360 LOC_Os08g29669 LOC_Os06g11320 LOC_Os11g07280 LOC_Os05g51550 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167c-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g50990.1 |
| Rice Genome Annotation | LOC_Os05g50990.1 |
| Ricechip | LOC_Os05g50990.1 |
| KEGG | osa:4339765 dosa:Os05t0587300-01 |
| Entrez-Gene | 4339765 |