RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os05g51150.3 View Network Show in Genome Browser
Other Names	Os05g0589200
Description	RNA polymerase sigma factor, putative, expressed
Gene Attributes	Chromosome: Chr5 CDS Coordinates (5'-3'): 29341241-29345481 Nucleotide Length: 1323
Protein-coding	LOC_Os05g51150

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0005975	carbohydrate metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0015979	photosynthesis	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003674	molecular_function	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g48300 LOC_Os05g25400 LOC_Os02g40510 LOC_Os01g08700 LOC_Os02g09590 LOC_Os03g47610 LOC_Os02g50010 LOC_Os01g43090 LOC_Os01g71720 LOC_Os02g07360 LOC_Os05g06510 More..
Downstream Genes	LOC_Os08g32930 LOC_Os07g43560 LOC_Os08g37700 LOC_Os06g04510 LOC_Os06g39906 LOC_Os07g34640 LOC_Os06g28194 LOC_Os07g38440 LOC_Os08g25624 LOC_Os09g37620 LOC_Os06g01400 More..

miRNA Regulations
miRNAs	osa-miR394

Database Links
Gramene	LOC_Os05g51150.3
Rice Genome Annotation	LOC_Os05g51150.3
Ricechip	LOC_Os05g51150.3
KEGG	osa:4339778 dosa:Os05t0589200-01
Entrez-Gene	4339778