RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51480.2 View Network Show in Genome Browser |
| Other Names | Os05g0592400 |
| Description | cleavage and polyadenylation specificity factor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29511855-29520052 Nucleotide Length: 3003 |
| Protein-coding | LOC_Os05g51480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g04870 LOC_Os02g05310 LOC_Os03g10780 LOC_Os01g74180 LOC_Os04g10650 LOC_Os02g58220 LOC_Os01g49680 LOC_Os04g58350 LOC_Os05g05260 LOC_Os02g08300 LOC_Os05g32600 More.. |
| Downstream Genes | LOC_Os08g25060 LOC_Os11g28350 LOC_Os08g33082 LOC_Os10g37490 LOC_Os06g07480 LOC_Os11g34300 LOC_Os08g37904 LOC_Os08g04270 LOC_Os11g10100 LOC_Os09g20590 LOC_Os08g02550 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51480.2 |
| Rice Genome Annotation | LOC_Os05g51480.2 |
| Ricechip | LOC_Os05g51480.2 |
| KEGG | osa:4339794 dosa:Os05t0592400-01 |
| Entrez-Gene | 4339794 |