RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51490.2 View Network Show in Genome Browser |
| Other Names | Os05g0592500 |
| Description | SIT4 phosphatase-associated protein domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29520197-29527464 Nucleotide Length: 2310 |
| Protein-coding | LOC_Os05g51490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49690 LOC_Os04g52200 LOC_Os01g40340 LOC_Os03g52470 LOC_Os05g22920 LOC_Os02g50370 LOC_Os05g05450 LOC_Os03g61200 LOC_Os03g22890 LOC_Os03g05720 LOC_Os01g65220 More.. |
| Downstream Genes | LOC_Os10g25110 LOC_Os06g01980 LOC_Os07g10350 LOC_Os06g40120 LOC_Os12g29660 LOC_Os07g33340 LOC_Os07g16950 LOC_Os11g19250 LOC_Os09g30210 LOC_Os06g03940 LOC_Os09g18320 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 osa-miR5817 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51490.2 |
| Rice Genome Annotation | LOC_Os05g51490.2 |
| Ricechip | LOC_Os05g51490.2 |
| KEGG | osa:4339795 dosa:Os05t0592500-01 |
| Entrez-Gene | 4339795 |