RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51650.1 View Network Show in Genome Browser |
| Other Names | Os05g0594900 |
| Description | LSM domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29623192-29624800 Nucleotide Length: 426 |
| Protein-coding | LOC_Os05g51650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g39444 LOC_Os02g37430 LOC_Os02g30624 LOC_Os04g31950 LOC_Os05g32310 LOC_Os01g64690 LOC_Os01g15310 LOC_Os03g18830 LOC_Os03g06190 LOC_Os02g01250 LOC_Os02g03440 More.. |
| Downstream Genes | LOC_Os08g05830 LOC_Os08g08040 LOC_Os07g12250 LOC_Os08g05530 LOC_Os11g43620 LOC_Os07g07220 LOC_Os06g46390 LOC_Os06g49800 LOC_Os06g02144 LOC_Os07g31340 LOC_Os08g02360 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51650.1 |
| Rice Genome Annotation | LOC_Os05g51650.1 |
| Ricechip | LOC_Os05g51650.1 |
| KEGG | osa:4339810 dosa:Os05t0594900-01 |
| Entrez-Gene | 4339810 |