RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os05g51700.1 View Network Show in Genome Browser
Other Names	Os05g0595400
Description	nucleoside diphosphate kinase, putative, expressed
Gene Attributes	Chromosome: Chr5 CDS Coordinates (5'-3'): 29660454-29663531 Nucleotide Length: 720
Protein-coding	LOC_Os05g51700

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0016301	kinase activity	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005739	mitochondrion	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os05g40820 LOC_Os01g59990 LOC_Os01g45370 LOC_Os04g50990 LOC_Os02g47140 LOC_Os02g28810 LOC_Os03g10520 LOC_Os04g28180 LOC_Os02g14059 LOC_Os03g59310 LOC_Os05g11710 More..
Downstream Genes	LOC_Os07g12250 LOC_Os07g10660 LOC_Os06g35730 LOC_Os08g02410 LOC_Os11g05562 LOC_Os08g44480 LOC_Os08g02400 LOC_Os07g09310 LOC_Os09g39540 LOC_Os12g03090 LOC_Os11g03400 More..

Pathways
KEGG Pathways	rn01110 rn01100 rn00230 rn00240
Metacyc Pathways	PWY-6126 PWY-6125 PPGPPMET-PWY PWY0-166 PWY-6545 PWY-5687 PWY0-163 DENOVOPURINE2-PWY PWY0-162

Reference
PubMed	15650338

Database Links
Gramene	LOC_Os05g51700.1
Rice Genome Annotation	LOC_Os05g51700.1
Ricechip	LOC_Os05g51700.1
KEGG	osa:4339815 dosa:Os05t0595400-01
Entrez-Gene	4339815