RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51700.3 View Network Show in Genome Browser |
| Other Names | Os05g0595400 |
| Description | nucleoside diphosphate kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29660454-29663531 Nucleotide Length: 552 |
| Protein-coding | LOC_Os05g51700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g40820 LOC_Os01g59990 LOC_Os01g45370 LOC_Os04g50990 LOC_Os02g47140 LOC_Os02g28810 LOC_Os03g10520 LOC_Os04g28180 LOC_Os02g14059 LOC_Os03g59310 LOC_Os05g11710 More.. |
| Downstream Genes | LOC_Os07g12250 LOC_Os07g10660 LOC_Os06g35730 LOC_Os08g02410 LOC_Os11g05562 LOC_Os08g44480 LOC_Os08g02400 LOC_Os07g09310 LOC_Os09g39540 LOC_Os12g03090 LOC_Os11g03400 More.. |
| Reference | |
|---|---|
| PubMed | 15650338 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51700.3 |
| Rice Genome Annotation | LOC_Os05g51700.3 |
| Ricechip | LOC_Os05g51700.3 |
| KEGG | osa:4339815 dosa:Os05t0595400-01 |
| Entrez-Gene | 4339815 |