RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51790.2 View Network Show in Genome Browser |
| Other Names | Os05g0596600 |
| Description | RecF/RecN/SMC N terminal domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29728155-29740820 Nucleotide Length: 3123 |
| Protein-coding | LOC_Os05g51790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g54240 LOC_Os01g72800 LOC_Os03g58640 LOC_Os02g10090 LOC_Os03g02970 LOC_Os02g03590 LOC_Os01g56290 LOC_Os02g37920 LOC_Os02g29464 LOC_Os05g41750 LOC_Os02g58020 More.. |
| Downstream Genes | LOC_Os07g30980 LOC_Os06g03940 LOC_Os12g19040 LOC_Os06g25250 LOC_Os09g14610 LOC_Os06g41380 LOC_Os10g34430 LOC_Os08g01930 LOC_Os07g33340 LOC_Os09g33460 LOC_Os08g40610 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1861h osa-miR1861j osa-miR1861d osa-miR1861a osa-miR1861b osa-miR1861f osa-miR1861i osa-miR1861l osa-miR1861o |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51790.2 |
| Rice Genome Annotation | LOC_Os05g51790.2 |
| Ricechip | LOC_Os05g51790.2 |
| KEGG | osa:4339821 dosa:Os05t0596600-02 |
| Entrez-Gene | 4339821 |