RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g51850.3 View Network Show in Genome Browser |
| Other Names | Os05g0597200 |
| Description | AT hook-containing DNA-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 29759219-29761425 Nucleotide Length: 1539 |
| Protein-coding | LOC_Os05g51850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40670 LOC_Os01g51154 LOC_Os02g48600 LOC_Os02g57820 LOC_Os01g63910 LOC_Os05g08360 LOC_Os02g57590 LOC_Os03g22740 LOC_Os01g58680 LOC_Os03g22730 LOC_Os02g46990 More.. |
| Downstream Genes | LOC_Os12g41920 LOC_Os06g21580 LOC_Os07g27140 LOC_Os08g37270 LOC_Os08g40150 LOC_Os06g03720 LOC_Os08g31810 LOC_Os06g14620 LOC_Os09g16090 LOC_Os07g30610 LOC_Os06g18790 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g51850.3 |
| Rice Genome Annotation | LOC_Os05g51850.3 |
| Ricechip | LOC_Os05g51850.3 |
| KEGG | dosa:Os05t0597200-01 |
| Entrez-Gene | 9270506 |