RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g01400.1 View Network Show in Genome Browser |
| Other Names | Os06g0103600 |
| Description | glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 233787-244624 Nucleotide Length: 3207 |
| Protein-coding | LOC_Os06g01400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11120 LOC_Os03g48850 LOC_Os05g42270 LOC_Os01g57360 LOC_Os05g50980 LOC_Os03g31750 LOC_Os03g02480 LOC_Os05g33570 LOC_Os01g58550 LOC_Os04g42290 LOC_Os03g10220 More.. |
| Downstream Genes | LOC_Os09g38420 LOC_Os06g43760 LOC_Os09g32650 LOC_Os11g05552 LOC_Os10g37690 LOC_Os09g25290 LOC_Os08g38170 LOC_Os06g44050 LOC_Os11g41900 LOC_Os12g07220 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g01400.1 |
| Rice Genome Annotation | LOC_Os06g01400.1 |
| Ricechip | LOC_Os06g01400.1 |
| KEGG | osa:4339847 dosa:Os06t0103600-01 |
| Entrez-Gene | 4339847 |