RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g01934.1 View Network Show in Genome Browser |
| Other Names | Os06g0108900 |
| Description | homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 523053-530057 Nucleotide Length: 1593 |
| Protein-coding | LOC_Os06g01934 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38120 LOC_Os05g03884 LOC_Os03g61130 LOC_Os01g19694 LOC_Os01g62920 LOC_Os03g03164 LOC_Os03g22634 |
| Downstream Genes | LOC_Os07g46570 LOC_Os08g07760 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g01934.1 |
| Rice Genome Annotation | LOC_Os06g01934.1 |
| Ricechip | LOC_Os06g01934.1 |
| KEGG | osa:4339876 dosa:Os06t0108900-02 |
| Entrez-Gene | 4339876 |