RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g01980.1 View Network Show in Genome Browser |
| Other Names | Os06g0109400 |
| Description | AAA family ATPase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 550916-555929 Nucleotide Length: 2313 |
| Protein-coding | LOC_Os06g01980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g43140 LOC_Os05g51490 LOC_Os01g40340 LOC_Os03g52470 LOC_Os02g50370 LOC_Os03g05720 LOC_Os03g22890 LOC_Os02g54110 LOC_Os05g22920 LOC_Os03g22320 LOC_Os04g52200 More.. |
| Downstream Genes | LOC_Os07g10350 LOC_Os06g09570 LOC_Os07g01920 LOC_Os12g29660 LOC_Os10g25110 LOC_Os07g33340 LOC_Os09g18320 LOC_Os12g03822 LOC_Os11g03990 LOC_Os09g30210 LOC_Os11g19250 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR172d-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g01980.1 |
| Rice Genome Annotation | LOC_Os06g01980.1 |
| Ricechip | LOC_Os06g01980.1 |
| KEGG | osa:4339880 dosa:Os06t0109400-01 |
| Entrez-Gene | 4339880 |