RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g01990.1 View Network Show in Genome Browser |
| Other Names | Os06g0109500 |
| Description | phosphoglycolate phosphatase, plasmid, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 555518-556547 Nucleotide Length: 912 |
| Protein-coding | LOC_Os06g01990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g01980 LOC_Os01g62870 LOC_Os01g74000 LOC_Os01g62860 LOC_Os01g01120 LOC_Os03g17700 LOC_Os05g38230 LOC_Os01g62880 LOC_Os05g05260 LOC_Os03g16110 LOC_Os05g23720 More.. |
| Downstream Genes | LOC_Os10g41930 LOC_Os08g14580 LOC_Os06g06090 LOC_Os09g24230 LOC_Os10g17280 LOC_Os10g38950 LOC_Os08g06060 LOC_Os12g07590 LOC_Os06g14740 LOC_Os06g15990 LOC_Os07g44430 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-181 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g01990.1 |
| Rice Genome Annotation | LOC_Os06g01990.1 |
| Ricechip | LOC_Os06g01990.1 |
| KEGG | osa:4339881 dosa:Os06t0109500-01 |
| Entrez-Gene | 4339881 |