RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g02000.1 View Network Show in Genome Browser |
| Other Names | Os06g0109600 |
| Description | adenylate kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 564534-567685 Nucleotide Length: 732 |
| Protein-coding | LOC_Os06g02000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61260 LOC_Os03g12020 LOC_Os03g07340 LOC_Os03g54040 LOC_Os03g24020 LOC_Os03g59310 LOC_Os03g49710 LOC_Os02g27760 LOC_Os03g60100 LOC_Os05g33020 LOC_Os01g42640 More.. |
| Downstream Genes | LOC_Os06g39700 LOC_Os08g21840 LOC_Os09g07910 LOC_Os08g15460 LOC_Os07g10660 LOC_Os07g07709 LOC_Os07g10720 LOC_Os09g17840 LOC_Os09g17830 LOC_Os06g46930 LOC_Os07g07719 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR415 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 rn00230 rn01110 |
| Metacyc Pathways | PWY0-162 P1-PWY PWY0-166 DENOVOPURINE2-PWY PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g02000.1 |
| Rice Genome Annotation | LOC_Os06g02000.1 |
| Ricechip | LOC_Os06g02000.1 |
| KEGG | osa:4339882 dosa:Os06t0109600-01 |
| Entrez-Gene | 4339882 |