RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g02160.1 View Network Show in Genome Browser |
| Other Names | Os06g0111600 |
| Description | AMP-binding enzyme family protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 647033-656849 Nucleotide Length: 3462 |
| Protein-coding | LOC_Os06g02160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38520 LOC_Os01g62350 LOC_Os01g49290 LOC_Os03g22950 LOC_Os05g47890 LOC_Os03g17120 LOC_Os01g34480 LOC_Os03g29170 LOC_Os05g51670 LOC_Os02g08190 LOC_Os01g42060 More.. |
| Downstream Genes | LOC_Os07g12150 LOC_Os12g34890 LOC_Os12g03090 LOC_Os11g03400 LOC_Os12g42150 LOC_Os09g33780 LOC_Os08g43580 LOC_Os06g25439 LOC_Os09g36860 LOC_Os08g41270 LOC_Os10g26140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00592 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g02160.1 |
| Rice Genome Annotation | LOC_Os06g02160.1 |
| Ricechip | LOC_Os06g02160.1 |
| KEGG | osa:4339893 dosa:Os06t0111600-01 |
| Entrez-Gene | 4339893 |