RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g02550.1 View Network Show in Genome Browser |
| Other Names | Os06g0116100 |
| Description | CPuORF21 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 885830-892703 Nucleotide Length: 1455 |
| Protein-coding | LOC_Os06g02550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47410 LOC_Os04g14790 LOC_Os03g21620 LOC_Os01g62080 LOC_Os01g32660 LOC_Os02g05630 LOC_Os02g55340 LOC_Os02g04240 LOC_Os03g43590 LOC_Os03g10570 LOC_Os01g63710 More.. |
| Downstream Genes | LOC_Os12g41180 LOC_Os07g08000 LOC_Os07g48290 LOC_Os06g48300 LOC_Os08g25200 LOC_Os11g04180 LOC_Os06g38470 LOC_Os12g03990 LOC_Os11g10100 LOC_Os07g32380 LOC_Os06g33549 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 osa-miR5543 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g02550.1 |
| Rice Genome Annotation | LOC_Os06g02550.1 |
| Ricechip | LOC_Os06g02550.1 |
| KEGG | osa:4339927 dosa:Os06t0116100-01 |
| Entrez-Gene | 4339927 |