RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g03540.1 View Network Show in Genome Browser |
| Other Names | Os06g0125400 |
| Description | oligopeptide transporter, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1364906-1369008 Nucleotide Length: 2286 |
| Protein-coding | LOC_Os06g03540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g40450 LOC_Os03g61760 LOC_Os03g18890 LOC_Os03g60710 LOC_Os01g37630 LOC_Os05g02020 LOC_Os01g21990 LOC_Os01g25360 LOC_Os05g35050 LOC_Os01g24480 LOC_Os02g44654 More.. |
| Downstream Genes | LOC_Os10g35180 LOC_Os06g42850 LOC_Os09g35730 LOC_Os11g47730 LOC_Os07g47540 LOC_Os09g28620 LOC_Os12g02350 LOC_Os11g18170 LOC_Os08g43320 LOC_Os06g44500 LOC_Os08g01850 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g03540.1 |
| Rice Genome Annotation | LOC_Os06g03540.1 |
| Ricechip | LOC_Os06g03540.1 |
| KEGG | osa:4339962 dosa:Os06t0125400-00 |
| Entrez-Gene | 4339962 |