RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g03830.2 View Network Show in Genome Browser |
| Other Names | Os06g0129100 |
| Description | retinol dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1539028-1542212 Nucleotide Length: 828 |
| Protein-coding | LOC_Os06g03830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g40730 LOC_Os02g38440 LOC_Os04g52400 LOC_Os01g53680 LOC_Os04g30760 LOC_Os02g30060 LOC_Os04g38420 LOC_Os05g44922 LOC_Os04g32070 LOC_Os01g09570 LOC_Os05g10650 More.. |
| Downstream Genes | LOC_Os12g43740 LOC_Os11g24484 LOC_Os12g27830 LOC_Os09g04730 LOC_Os12g13930 LOC_Os09g37280 LOC_Os06g05860 LOC_Os06g19610 LOC_Os06g19590 LOC_Os11g07930 LOC_Os11g07922 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 osa-miR167a-5p osa-miR167b osa-miR167c-5p osa-miR167d-5p osa-miR167e-5p osa-miR167f osa-miR167g osa-miR167h-5p osa-miR167i-5p osa-miR167j |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g03830.2 |
| Rice Genome Annotation | LOC_Os06g03830.2 |
| Ricechip | LOC_Os06g03830.2 |
| KEGG | osa:4339991 dosa:Os06t0129100-01 |
| Entrez-Gene | 4339991 |