RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g03940.1 View Network Show in Genome Browser |
| Other Names | Os06g0130000 |
| Description | spastin, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1588473-1596159 Nucleotide Length: 1464 |
| Protein-coding | LOC_Os06g03940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g51490 LOC_Os01g40340 LOC_Os01g49690 LOC_Os04g52940 LOC_Os03g19350 LOC_Os05g44310 LOC_Os05g48510 LOC_Os02g16670 LOC_Os05g51790 LOC_Os05g38400 LOC_Os02g11050 More.. |
| Downstream Genes | LOC_Os11g40150 LOC_Os06g50050 LOC_Os09g33980 LOC_Os12g24320 LOC_Os12g31370 LOC_Os07g30980 LOC_Os06g06090 LOC_Os12g28177 LOC_Os12g28137 LOC_Os07g48960 LOC_Os12g28590 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g03940.1 |
| Rice Genome Annotation | LOC_Os06g03940.1 |
| Ricechip | LOC_Os06g03940.1 |
| KEGG | osa:4339999 dosa:Os06t0130000-01 |
| Entrez-Gene | 4339999 |